Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ArgD | DapE | RN09_2032 | RN09_1484 | Acetylornithine aminotransferase. | Succinyl-diaminopimelate desuccinylase DapE. | 0.913 |
ArgD | GuaA | RN09_2032 | RN09_4153 | Acetylornithine aminotransferase. | GMP synthase. | 0.469 |
ArgD | RN09_1053 | RN09_2032 | RN09_1053 | Acetylornithine aminotransferase. | N-succinyldiaminopimelate aminotransferase DapC. | 0.909 |
ArgD | dapD | RN09_2032 | RN09_1483 | Acetylornithine aminotransferase. | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | 0.912 |
ArgD | lysA | RN09_2032 | RN09_1597 | Acetylornithine aminotransferase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.409 |
Ask | DapE | RN09_4532 | RN09_1484 | Aspartokinase; Belongs to the aspartokinase family. | Succinyl-diaminopimelate desuccinylase DapE. | 0.633 |
Ask | GuaA | RN09_4532 | RN09_4153 | Aspartokinase; Belongs to the aspartokinase family. | GMP synthase. | 0.525 |
Ask | RN09_1053 | RN09_4532 | RN09_1053 | Aspartokinase; Belongs to the aspartokinase family. | N-succinyldiaminopimelate aminotransferase DapC. | 0.508 |
Ask | RN09_1456 | RN09_4532 | RN09_1456 | Aspartokinase; Belongs to the aspartokinase family. | Aminotransferase. | 0.771 |
Ask | dapA | RN09_4532 | RN09_3346 | Aspartokinase; Belongs to the aspartokinase family. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.910 |
Ask | dapB | RN09_4532 | RN09_3367 | Aspartokinase; Belongs to the aspartokinase family. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.891 |
Ask | dapD | RN09_4532 | RN09_1483 | Aspartokinase; Belongs to the aspartokinase family. | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | 0.801 |
Ask | lysA | RN09_4532 | RN09_1597 | Aspartokinase; Belongs to the aspartokinase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.894 |
DapE | ArgD | RN09_1484 | RN09_2032 | Succinyl-diaminopimelate desuccinylase DapE. | Acetylornithine aminotransferase. | 0.913 |
DapE | Ask | RN09_1484 | RN09_4532 | Succinyl-diaminopimelate desuccinylase DapE. | Aspartokinase; Belongs to the aspartokinase family. | 0.633 |
DapE | RN09_1053 | RN09_1484 | RN09_1053 | Succinyl-diaminopimelate desuccinylase DapE. | N-succinyldiaminopimelate aminotransferase DapC. | 0.964 |
DapE | RN09_1456 | RN09_1484 | RN09_1456 | Succinyl-diaminopimelate desuccinylase DapE. | Aminotransferase. | 0.952 |
DapE | dapA | RN09_1484 | RN09_3346 | Succinyl-diaminopimelate desuccinylase DapE. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.931 |
DapE | dapB | RN09_1484 | RN09_3367 | Succinyl-diaminopimelate desuccinylase DapE. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.767 |
DapE | dapD | RN09_1484 | RN09_1483 | Succinyl-diaminopimelate desuccinylase DapE. | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | 0.990 |
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