RN09_1524 protein (Mycobacterium tuberculosis variant africanum)

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

RN09_1524

Sugar ABC transporter ATP-binding protein SugC. (126 aa)

Predicted Functional Partners:

SugB

0.999

LpqY

0.996

SugA

0.995

SugC

0.890

UgpA

0.788

UspC

0.768

UgpB

0.754

RN09_1519

0.750

RN09_2514

0.740

UspA

0.740

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LpqY	RN09_1519	RN09_1520	RN09_1519	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Transmembrane protein.	0.851
LpqY	RN09_1524	RN09_1520	RN09_1524	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sugar ABC transporter ATP-binding protein SugC.	0.996
LpqY	RN09_2514	RN09_1520	RN09_2514	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sugar ABC transporter permease.	0.780
LpqY	SugA	RN09_1520	RN09_1521	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sugar ABC transporter permease SugA.	0.999
LpqY	SugB	RN09_1520	RN09_1522	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sugar ABC transporter permease SugB.	0.999
LpqY	SugC	RN09_1520	RN09_1523	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sugar ABC transporter ATP-binding protein SugC.	0.996
LpqY	UgpA	RN09_1520	RN09_3436	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sn-glycerol-3-phosphate ABC transporter permease UgpA.	0.833
LpqY	UgpB	RN09_1520	RN09_3434	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sn-glycerol-3-phosphate ABC transporter substrate-binding lipoprotein UgpB.	0.571
LpqY	UspA	RN09_1520	RN09_2842	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sugar ABC transporter permease UspA.	0.802
LpqY	UspC	RN09_1520	RN09_2844	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	Sugar ABC transporter substrate-binding lipoprotein UspC.	0.463
RN09_1519	LpqY	RN09_1519	RN09_1520	Transmembrane protein.	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	0.851
RN09_1519	RN09_1524	RN09_1519	RN09_1524	Transmembrane protein.	Sugar ABC transporter ATP-binding protein SugC.	0.750
RN09_1519	SugA	RN09_1519	RN09_1521	Transmembrane protein.	Sugar ABC transporter permease SugA.	0.845
RN09_1519	SugB	RN09_1519	RN09_1522	Transmembrane protein.	Sugar ABC transporter permease SugB.	0.841
RN09_1519	SugC	RN09_1519	RN09_1523	Transmembrane protein.	Sugar ABC transporter ATP-binding protein SugC.	0.750
RN09_1524	LpqY	RN09_1524	RN09_1520	Sugar ABC transporter ATP-binding protein SugC.	Trehalose ABC transporter substrate-binding lipoprotein LpqY.	0.996
RN09_1524	RN09_1519	RN09_1524	RN09_1519	Sugar ABC transporter ATP-binding protein SugC.	Transmembrane protein.	0.750
RN09_1524	RN09_2514	RN09_1524	RN09_2514	Sugar ABC transporter ATP-binding protein SugC.	Sugar ABC transporter permease.	0.740
RN09_1524	SugA	RN09_1524	RN09_1521	Sugar ABC transporter ATP-binding protein SugC.	Sugar ABC transporter permease SugA.	0.995
RN09_1524	SugB	RN09_1524	RN09_1522	Sugar ABC transporter ATP-binding protein SugC.	Sugar ABC transporter permease SugB.	0.999