RN09_1561 protein (Mycobacterium tuberculosis variant africanum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

Experiments

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[Homology]

Score

RN09_1561

ABC transporter ATP-binding protein. (254 aa)

Predicted Functional Partners:

Tbd2

0.997

PknB

0.917

SucA

0.899

PknH2

0.877

RN09_1564

0.837

GltB

0.709

RN09_2500

0.680

DevS

0.680

RN09_1500

0.664

RN09_1560

0.657

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DevS	RN09_1561	RN09_3807	RN09_1561	Two component sensor histidine kinase DevS.	ABC transporter ATP-binding protein.	0.680
DevS	Tbd2	RN09_3807	RN09_1562	Two component sensor histidine kinase DevS.	ABC transporter ATP-binding protein.	0.680
GltB	RN09_1561	RN09_4716	RN09_1561	Glutamate synthase large subunit.	ABC transporter ATP-binding protein.	0.709
GltB	SucA	RN09_4716	RN09_1536	Glutamate synthase large subunit.	Putative 2-oxoglutarate dehydrogenase SUCA (alpha-ketoglutarate dehydrogenase); Multifunctional 2-oxoglutarate dehydrogenase E1 component /2-oxoglutarate dehydrogenase dihydrolipoyllysine-residue succinyltransferase.	0.934
GltB	Tbd2	RN09_4716	RN09_1562	Glutamate synthase large subunit.	ABC transporter ATP-binding protein.	0.709
PknB	RN09_1561	RN09_0022	RN09_1561	Serine/threonine-protein kinase PknB.	ABC transporter ATP-binding protein.	0.917
PknB	RN09_1564	RN09_0022	RN09_1564	Serine/threonine-protein kinase PknB.	Serine/threonine-protein kinase PknH.	0.403
PknB	Tbd2	RN09_0022	RN09_1562	Serine/threonine-protein kinase PknB.	ABC transporter ATP-binding protein.	0.917
PknH2	RN09_1560	RN09_1563	RN09_1560	Protein kinase.	Serine/threonine-protein kinase PknH.	0.533
PknH2	RN09_1561	RN09_1563	RN09_1561	Protein kinase.	ABC transporter ATP-binding protein.	0.877
PknH2	RN09_1564	RN09_1563	RN09_1564	Protein kinase.	Serine/threonine-protein kinase PknH.	0.785
PknH2	Tbd2	RN09_1563	RN09_1562	Protein kinase.	ABC transporter ATP-binding protein.	0.958
RN09_1500	RN09_1561	RN09_1500	RN09_1561	Tetronasin ABC transporter integral membrane protein.	ABC transporter ATP-binding protein.	0.664
RN09_1500	Tbd2	RN09_1500	RN09_1562	Tetronasin ABC transporter integral membrane protein.	ABC transporter ATP-binding protein.	0.664
RN09_1560	PknH2	RN09_1560	RN09_1563	Serine/threonine-protein kinase PknH.	Protein kinase.	0.533
RN09_1560	RN09_1561	RN09_1560	RN09_1561	Serine/threonine-protein kinase PknH.	ABC transporter ATP-binding protein.	0.657
RN09_1560	RN09_1564	RN09_1560	RN09_1564	Serine/threonine-protein kinase PknH.	Serine/threonine-protein kinase PknH.	0.407
RN09_1560	Tbd2	RN09_1560	RN09_1562	Serine/threonine-protein kinase PknH.	ABC transporter ATP-binding protein.	0.657
RN09_1561	DevS	RN09_1561	RN09_3807	ABC transporter ATP-binding protein.	Two component sensor histidine kinase DevS.	0.680
RN09_1561	GltB	RN09_1561	RN09_4716	ABC transporter ATP-binding protein.	Glutamate synthase large subunit.	0.709