STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1663Iron ABC transporter ATP-binding protein/permease IrtA. (859 aa)    
Predicted Functional Partners:
RN09_1664
Iron ABC transporter ATP-binding protein/permease IrtB.
 
0.999
MbtB
Phenyloxazoline synthase.
 
  
 0.951
MbtA
Bifunctional salicyl-AMP ligase/salicyl-S-ArCP synthetase; Overlaps another CDS with the same product name.
 
  
 0.847
RN09_2929
Bifunctional salicyl-AMP ligase/salicyl-S-ArCP synthetase; Overlaps another CDS with the same product name.
 
  
 0.844
RN09_0500
Membrane bound polyketide synthase.
  
 0.831
RN09_2045
Polyketide synthase; Overlaps another CDS with the same product name.
  
 0.831
MbtI
Salicylate synthase.
 
  
 0.790
RN09_2047
Polyketide synthase; Overlaps another CDS with the same product name.
  
 0.787
Pks6
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
  
 0.779
RN09_3555
Phthiocerol synthesis polyketide synthase type I PpsC.
  
 0.779
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.