Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1685Hypothetical protein. (225 aa)    
Predicted Functional Partners:
RN09_1686
Hypothetical protein.
      0.846
RN09_4087
PPE family protein PPE55; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family.
  
     0.729
RN09_4091
PPE family protein PPE56.
  
     0.725
PPE6
PPE family protein PPE5.
  
     0.723
RN09_2563
Hypothetical protein.
  
    0.722
RN09_0438
PPE family protein PPE8.
  
     0.721
RN09_4083
PPE family protein PPE55; Overlaps another CDS with the same product name.
  
     0.720
RN09_2555
Hypothetical protein.
  
    0.716
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
  
     0.709
RN09_3419
CRISPR type III-associated RAMP protein Csm5.
  
     0.703
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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