Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1817Transcriptional regulator. (187 aa)    
Predicted Functional Partners:
RN09_1818
Iron-regulated aconitate hydratase; Overlaps another CDS with the same product name.
  
    0.813
Acn
Iron-regulated aconitate hydratase; Overlaps another CDS with the same product name.
  
    0.813
35kd_ag
Alanine-rich protein.
 
    0.702
RN09_2677
3'-5' exoribonuclease; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.651
RN09_1157
Chorismate mutase.
  
    0.644
RN09_0539
ATPase; Overlaps another CDS with the same product name.
  
     0.641
LprD
Lipoprotein LprD.
  
     0.639
RN09_2010
Hypothetical protein.
  
     0.625
RN09_1820
Membrane protein.
       0.589
RN09_3005
Integral membrane protein.
  
     0.559
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.