STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1825Hypothetical protein. (317 aa)    
Predicted Functional Partners:
RN09_1826
Membrane protein.
 
  
 0.992
MoxR1
Transcriptional regulator MoxR1.
  
 0.982
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
     
 0.848
egtD
Histidine-specific methyltransferase EtgD; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
      
 0.846
RN09_4496
Anion transporter ATPase; Overlaps another CDS with the same product name.
 
   
 0.834
MoxR3
Methanol dehydrogenase transcriptional regulator MoxR.
  
 0.711
CitE
Citrate (pro-3S)-lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
      
 0.688
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
     
 0.682
MoxR2
Methanol dehydrogenase transcriptional regulator MoxR.
  
 0.675
RN09_3737
Hypothetical protein; Belongs to the HpcH/HpaI aldolase family.
      
 0.627
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.