RN09_1850 protein (Mycobacterium tuberculosis variant africanum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

Experiments

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[Homology]

Score

RN09_1850

Esterase LipL. (86 aa)

Predicted Functional Partners:

LipL

0.884

LipD

0.548

RN09_1823

0.500

RN09_1821

0.499

RN09_1822

0.499

RN09_1847

0.474

RN09_1848

0.474

RN09_1846

0.464

RN09_1840

0.459

MutA

0.459

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LipD	RN09_1821	RN09_2381	RN09_1821	Lipase LipD.	Peptidoglycan endopeptidase RipA; Overlaps another CDS with the same product name.	0.481
LipD	RN09_1822	RN09_2381	RN09_1822	Lipase LipD.	Peptidoglycan endopeptidase RipA; Overlaps another CDS with the same product name.	0.481
LipD	RN09_1823	RN09_2381	RN09_1823	Lipase LipD.	Peptidoglycan endopeptidase RipB.	0.500
LipD	RN09_1850	RN09_2381	RN09_1850	Lipase LipD.	Esterase LipL.	0.548
LipL	MutA	RN09_1849	RN09_1841	Esterase LipL.	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	0.598
LipL	RN09_1821	RN09_1849	RN09_1821	Esterase LipL.	Peptidoglycan endopeptidase RipA; Overlaps another CDS with the same product name.	0.499
LipL	RN09_1822	RN09_1849	RN09_1822	Esterase LipL.	Peptidoglycan endopeptidase RipA; Overlaps another CDS with the same product name.	0.499
LipL	RN09_1823	RN09_1849	RN09_1823	Esterase LipL.	Peptidoglycan endopeptidase RipB.	0.500
LipL	RN09_1840	RN09_1849	RN09_1840	Esterase LipL.	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	0.598
LipL	RN09_1846	RN09_1849	RN09_1846	Esterase LipL.	mRNA interferase MazF4.	0.613
LipL	RN09_1847	RN09_1849	RN09_1847	Esterase LipL.	Transport system kinase; Overlaps another CDS with the same product name.	0.620
LipL	RN09_1848	RN09_1849	RN09_1848	Esterase LipL.	Transport system kinase; Overlaps another CDS with the same product name.	0.620
LipL	RN09_1850	RN09_1849	RN09_1850	Esterase LipL.	Esterase LipL.	0.884
MutA	LipL	RN09_1841	RN09_1849	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	Esterase LipL.	0.598
MutA	RN09_1840	RN09_1841	RN09_1840	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	0.998
MutA	RN09_1846	RN09_1841	RN09_1846	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	mRNA interferase MazF4.	0.761
MutA	RN09_1847	RN09_1841	RN09_1847	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	Transport system kinase; Overlaps another CDS with the same product name.	0.996
MutA	RN09_1848	RN09_1841	RN09_1848	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	Transport system kinase; Overlaps another CDS with the same product name.	0.999
MutA	RN09_1850	RN09_1841	RN09_1850	methylmalonyl-CoA mutase small subunit; Overlaps another CDS with the same product name.	Esterase LipL.	0.459
RN09_1821	LipD	RN09_1821	RN09_2381	Peptidoglycan endopeptidase RipA; Overlaps another CDS with the same product name.	Lipase LipD.	0.481