STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1900Hypothetical protein. (144 aa)    
Predicted Functional Partners:
RN09_1902
Transcriptional regulator.
 
     0.800
MbtB
Phenyloxazoline synthase.
  
 
 0.652
RN09_3100
Fatty acid synthase; Overlaps another CDS with the same product name.
  
  
 0.637
RN09_3101
Fatty acid synthase; Overlaps another CDS with the same product name.
  
  
 0.637
Fas
Fatty acid synthase; Overlaps another CDS with the same product name.
  
  
 0.637
RN09_1901
Monooxygenase.
     
 0.610
PapA3
Acyltransferase PapA.
  
   0.560
PapA1
Acyltransferase PapA.
  
   0.554
PapA2
Trehalose-2-sulfate acyltransferase.
  
   0.542
RN09_1892
Polyketide synthase.
 
 
 0.505
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.