Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ChaAIonic transporter integral membrane protein ChaA. (215 aa)    
Predicted Functional Partners:
RN09_1970
Ionic transporter integral membrane protein ChaA.
     0.987
Pks6
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
   
  
 0.726
NarK1
Nitrate/nitrite transporter.
   
  
 0.674
MmpL1
Transmembrane transport protein MmpL1; Overlaps another CDS with the same product name.
      
 0.668
GlgP
Glycogen phosphorylase; Overlaps another CDS with the same product name.
      
 0.660
MgtC
Mg2+ transport P-type ATPase MgtC.
      
 0.576
Mce1A
Mce family protein Mce1A; Overlaps another CDS with the same product name.
      
 0.515
YjcE
Na(+)/H(+) transporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
  
 
 0.507
vapC-31
Ribonuclease VapC21; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.482
RN09_3297
Transmembrane alanine/leucine-rich protein.
  
    0.451
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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