STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2011Hypothetical protein. (489 aa)    
Predicted Functional Partners:
RN09_2010
Hypothetical protein.
       0.856
RN09_2013
Bifunctional lysine--tRNA ligase/phosphatidylglycerol lysyltransferase.
 
   
 0.762
lysS
Bifunctional lysine--tRNA ligase/phosphatidylglycerol lysyltransferase; Belongs to the class-II aminoacyl-tRNA synthetase family.
     
 0.667
RN09_0865
Mycofactocin biosynthesis glycosyltransferase MftF.
 
    0.613
RN09_1983
Hypothetical protein.
 
   
 0.611
RN09_0800
Cyclopropane mycolic acid synthase MmaA2; Overlaps another CDS with the same product name.
  
     0.592
RN09_0201
Zinc-type alcohol dehydrogenase subunit E; Overlaps another CDS with the same product name.
  
 
 0.572
AdhE1
Zinc-type alcohol dehydrogenase subunit E; Overlaps another CDS with the same product name.
  
 
 0.572
AdhB
Alcohol dehydrogenase B.
  
 
 0.572
AdhE2
S-nitrosomycothiol reductase MscR.
  
 
 0.572
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.