Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PE17PE family protein PE17. (310 aa)    
Predicted Functional Partners:
RN09_2020
Adenylate cyclase.
       0.774
PPE11
PPE family protein PPE11; Belongs to the mycobacterial PPE family.
      
 0.712
PPE26
PPE family protein PPE26; Belongs to the mycobacterial PPE family.
      
 0.687
PPE17
PPE family protein PPE17; Overlaps another CDS with the same product name.
      
 0.655
RN09_2021
Transmembrane protein.
       0.614
Icl
Isocitrate lyase.
      
 0.525
RN09_0533
Tuberculin-like peptide.
      
 0.509
pheT
phenylalanine--tRNA ligase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.447
RN09_2018
Hypothetical protein.
       0.438
PPE25
PPE family protein PPE25; Belongs to the mycobacterial PPE family.
      
 0.411
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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