STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPE22PPE family protein PPE22; Belongs to the mycobacterial PPE family. (385 aa)    
Predicted Functional Partners:
CycA
D-serine/alanine/glycine transporter protein CycA.
       0.724
RN09_2092
Methyltransferase.
     
 0.692
RN09_2095
PPE family protein PPE23; Overlaps another CDS with the same product name.
       0.613
PPE23
PPE family protein PPE23; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family.
      
0.613
RN09_2097
PPE family protein PPE23; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family.
      
0.613
RN09_2728
Membrane protein.
      
 0.534
RN09_2098
Hypothetical protein.
       0.426
RN09_2091
Hypothetical protein.
       0.420
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.