Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_2135Nitrate reductase-like protein NarX; Overlaps another CDS with the same product name. (76 aa)    
Predicted Functional Partners:
RN09_2137
Nitrate reductase-like protein NarX; Overlaps another CDS with the same product name.
 
 0.988
RN09_2136
Nitrate reductase-like protein NarX; Overlaps another CDS with the same product name.
     0.987
NarH
Nitrate reductase subunit beta.
 
 
 0.979
NarK2
Nitrate/nitrite transporter.
 
  
 0.975
NarJ
Nitrate reductase subunit delta.
  
 0.967
NarG
Nitrate reductase subunit alpha; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.960
RN09_2133
Membrane protein.
 
   
 0.672
RN09_2134
Hypothetical protein.
     
 0.565
RN09_0326
Nitrite extrusion protein NarU; Overlaps another CDS with the same product name.
 
  
 0.549
CysG
Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase.
  
    0.549
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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