Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2140Sulfate ABC transporter permease. (358 aa)    
Predicted Functional Partners:
RN09_2141
Sulfate ABC transporter permease.
     0.994
PtbB
Phosphotyrosine protein phosphatase.
   
 
 0.564
RN09_2142
Antitoxin VapB34.
       0.551
RN09_1575
Hypothetical protein.
  
   0.509
RN09_1892
Polyketide synthase.
 
 
 
 0.484
NuoM
NADH-quinone oxidoreductase subunit M.
  
 
 0.455
RN09_0501
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.442
QcrB
Ubiquinol-cytochrome C reductase cytochrome subunit B.
    
 
 0.434
PpsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
 
 0.430
RN09_2042
Polyketide synthase; Overlaps another CDS with the same product name.
   
 
 0.428
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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