Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN09_2147Serine/threonine-protein kinase PknF. (143 aa)    
Predicted Functional Partners:
PknF
Serine/threonine-protein kinase PknF.
     0.983
Ppp
Phosphoserine/threonine phosphatase PstP.
 
 
 0.861
Cfp17
Glycogen accumulation regulator GarA.
 
 
 
 0.787
PknK
Serine/threonine-protein kinase PknK; Overlaps another CDS with the same product name.
 
   
 0.752
TB39.8
FHA domain-containing protein FhaA.
 
 
 
 0.721
PknG
Serine/threonine-protein kinase PknG.
  
   
 0.688
RN09_2149
ABC transporter ATP-binding protein/permease.
  
 
 0.570
RN09_0027
FHA domain-containing protein FhaB.
 
 
 
 0.566
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
     
 0.549
RN09_2145
Membrane protein.
       0.539
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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