Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2158Hypothetical protein. (503 aa)    
Predicted Functional Partners:
RN09_4483
Protease.
 
 
 
 0.708
RN09_0533
Tuberculin-like peptide.
  
     0.696
RN09_4530
Hypothetical protein.
  
  
 0.622
RN09_1088
Hypothetical protein.
   
  
 0.596
CtpD
Cobalt/nickel-exporting P-type ATPase.
   
  
 0.571
Mce4A
Mce family protein Mce4A.
 
 
   0.570
RN09_0386
Hypothetical protein.
 
  
 0.544
RN09_2781
Proline-rich protein.
 
  
 0.535
atpF-2
ATP synthase subunit b/delta; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction; Belongs to the ATPase delta chain family.
  
  
 0.526
RN09_1938
Hypothetical protein.
  
     0.525
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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