STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2162Hypothetical protein. (945 aa)    
Predicted Functional Partners:
MmpL13b
Transmembrane transport protein.
  
   
 0.690
LppX
Lipoprotein LppX.
  
   
 0.672
RN09_2161
Sulfite oxidase.
     
 0.667
MmpL3
Transmembrane transport protein MmpL3.
  
   
 0.578
MmpS5
Membrane protein MmpS5.
   
 
 0.532
RN09_1958
Hypothetical protein.
  
     0.522
Cut1
Cutinase.
 
   
 0.498
mltG
Membrane protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
  
 0.497
RN09_0250
Transmembrane protein.
 
     0.459
RN09_1610
Hypothetical protein.
  
     0.452
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.