Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cut1Cutinase. (218 aa)    
Predicted Functional Partners:
UgpA
Sn-glycerol-3-phosphate ABC transporter permease UgpA.
      
 0.806
UgpC
Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
      
 0.731
RN09_4222
ESX-4 secretion system protein EccD4.
      
 0.721
FadE1
acyl-CoA dehydrogenase FadE1.
      
 0.717
RN09_0499
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
  
   0.713
FadE24
acyl-CoA dehydrogenase FadE24.
      
 0.713
UspA
Sugar ABC transporter permease UspA.
      
 0.712
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
      
 0.666
RN09_1951
Hypothetical protein.
  
    0.631
PtbB
Phosphotyrosine protein phosphatase.
  
 
 0.594
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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