STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cut1Cutinase. (218 aa)    
Predicted Functional Partners:
UgpA
Sn-glycerol-3-phosphate ABC transporter permease UgpA.
      
 0.814
PtbB
Phosphotyrosine protein phosphatase.
  
 
 0.765
NuoM
NADH-quinone oxidoreductase subunit M.
    
 
 0.735
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.721
RN09_4222
ESX-4 secretion system protein EccD4.
      
 0.690
UgpC
Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
      
 0.688
FadE1
acyl-CoA dehydrogenase FadE1.
      
 0.684
FadE24
acyl-CoA dehydrogenase FadE24.
      
 0.675
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
 
 
 0.671
RN09_0499
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
 
    0.667
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.