Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2172Hypothetical protein. (262 aa)    
Predicted Functional Partners:
RN09_2170
Hypothetical protein.
       0.801
RN09_2171
Hypothetical protein.
       0.801
GltB
Glutamate synthase large subunit.
       0.533
RN09_2187
Hypothetical protein.
  
     0.507
RN09_2173
Hypothetical protein.
       0.503
RN09_2599
Integral membrane protein.
  
     0.490
RN09_0114
Membrane protein.
  
     0.447
NicT
Nickel-transport integral membrane protein NicT; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.443
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
    0.436
RN09_0180
Transmembrane protein.
 
     0.417
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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