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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2174Hypothetical protein. (367 aa)    
Predicted Functional Partners:
RN09_4613
Hypothetical protein.
  
    0.771
RN09_0632
Hypothetical protein.
  
    0.765
RN09_0482
Hypothetical protein.
  
    0.759
RN09_0416
Hypothetical protein.
  
    0.757
RN09_2583
Hypothetical protein.
  
    0.741
RN09_0144
Transmembrane acyltransferase; Overlaps another CDS with the same product name.
 
     0.737
RN09_0119
Hypothetical protein.
  
     0.727
RN09_1419
Hypothetical protein.
  
     0.713
RN09_3311
Transmembrane alanine/glycine-rich protein.
  
     0.707
RN09_3043
Glycerol-3-phosphate acyltransferase; Overlaps another CDS with the same product name.
  
     0.702
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.