Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2177Hypothetical protein. (89 aa)    
Predicted Functional Partners:
RN09_1178
Copper-sensing transcriptional repressor CsoR.
  
   
 0.746
RN09_2178
Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
     
 0.704
PE_PGRS31
PE-PGRS family protein PE_PGRS31.
  
    0.524
RN09_0201
Zinc-type alcohol dehydrogenase subunit E; Overlaps another CDS with the same product name.
  
  
 0.482
AdhE1
Zinc-type alcohol dehydrogenase subunit E; Overlaps another CDS with the same product name.
  
  
 0.482
AdhB
Alcohol dehydrogenase B.
  
  
 0.482
AdhE2
S-nitrosomycothiol reductase MscR.
  
  
 0.482
AdhD
Alcohol dehydrogenase D.
  
  
 0.482
RN09_0952
Hypothetical protein.
  
  
 0.470
RN09_0953
Hypothetical protein.
  
  
 0.470
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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