Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2186Oxidoreductase. (456 aa)    
Predicted Functional Partners:
RN09_2187
Hypothetical protein.
 
     0.918
RN09_2185
Transcriptional regulator.
       0.586
LldD1
Mycofactocin system heme/flavin oxidoreductase MftD.
 
 0.523
FixA
Electron transfer flavoprotein subunit beta.
  
 
 0.519
FixB
Electron transfer flavoprotein subunit alpha.
  
 
 0.518
RN09_3860
Peroxidase.
   
    0.514
RN09_2184
L-gulono-1,4-lactone dehydrogenase.
      
 0.509
Cut1
Cutinase.
  
    0.500
PlsB1
Acyltransferase PlsB; Belongs to the GPAT/DAPAT family.
    
 0.496
RN09_3043
Glycerol-3-phosphate acyltransferase; Overlaps another CDS with the same product name.
    
 0.496
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.