Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_2230Mg2+ transport P-type ATPase MgtC. (71 aa)    
Predicted Functional Partners:
MgtC
Mg2+ transport P-type ATPase MgtC.
     0.984
RN09_1989
Membrane protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
  
  
 0.593
RN09_2229
Hypothetical protein.
  
    0.489
RN09_0136
Cation-transporter ATPase I; Overlaps another CDS with the same product name.
  
 
 0.467
CtpI
Cation-transporter ATPase I; Overlaps another CDS with the same product name.
  
 
 0.467
RN09_0138
Cation-transporter ATPase I; Overlaps another CDS with the same product name.
  
 
 0.467
CtpH
Metal cation transporting ATPase H.
  
 
 0.467
CtpE
Metal cation transporter ATPase E.
  
 
 0.467
CtpF
Cation transporter ATPase F.
  
 
 0.467
GadB
Glutamate decarboxylase GadB; Belongs to the group II decarboxylase family.
   
  
 0.426
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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