Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2242Vitamin B12 transport ATP-binding protein BacA; Overlaps another CDS with the same product name. (224 aa)    
Predicted Functional Partners:
RN09_2241
Vitamin B12 transport ATP-binding protein BacA; Overlaps another CDS with the same product name.
     0.994
RN09_2243
Acetolactate synthase large subunit IlvG; Overlaps another CDS with the same product name.
       0.576
RN09_2244
Acetolactate synthase large subunit IlvG; Overlaps another CDS with the same product name.
       0.576
LprB
Lipoprotein LprB.
  
     0.545
LprC
Lipoprotein LprC.
  
     0.513
RN09_0538
ATPase; Overlaps another CDS with the same product name.
  
 
 0.501
RN09_0539
ATPase; Overlaps another CDS with the same product name.
  
 
 0.497
PE_PGRS33
Putative PE family protein.
       0.490
RN09_0815
Carotenoid cleavage oxygenase.
  
 
  0.461
RN09_2239
PE-PGRS family protein.
       0.448
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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