Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2276Sensor-transducer protein BlaR. (95 aa)    
Predicted Functional Partners:
RN09_2277
Sensor-transducer protein BlaR.
     0.986
RN09_2278
Transcriptional repressor BlaI.
 
    0.840
ftsH
Zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.742
RN09_2465
Hypothetical protein.
  
     0.726
Gnd1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
       0.722
RN09_4652
Terminal beta-(1->2)-arabinofuranosyltransferase.
  
     0.706
RN09_1842
methylmalonyl-CoA mutase large subunit; Overlaps another CDS with the same product name.
  
     0.699
LprB
Lipoprotein LprB.
 
  
 0.692
RN09_4703
Hypothetical protein.
  
     0.681
RN09_3258
Alpha-(1->3)-arabinofuranosyltransferase.
  
     0.675
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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