Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2297Integral membrane protein. (240 aa)    
Predicted Functional Partners:
RN09_1327
Hypothetical protein.
 
     0.720
RN09_1164
Integral membrane protein.
  
    0.675
RN09_2298
Hypothetical protein.
       0.660
RN09_2299
Hypothetical protein.
       0.660
RN09_2300
Short-chain type dehydrogenase.
       0.660
RN09_2301
Short-chain type dehydrogenase.
       0.660
RN09_1328
Hypothetical protein.
 
     0.655
RN09_1433
Conserved transmembrane protein; Polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol pentamannoside mannosyltransferase.
 
     0.639
RN09_4422
Transmembrane protein.
  
     0.634
RN09_0288
Alpha-(1->3)-arabinofuranosyltransferase; Overlaps another CDS with the same product name.
  
     0.619
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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