STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfp21Cutinase; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle. (217 aa)    
Predicted Functional Partners:
PE_PGRS22
PE-PGRS family protein PE_PGRS22.
      
 0.675
RN09_0499
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
  
     0.643
RN09_1951
Hypothetical protein.
  
     0.636
RN09_4649
Membrane protein.
  
   
 0.593
PE_PGRS35
PE-PGRS family protein PE_PGRS35.
      
 0.560
RN09_2443
Hypothetical protein; Belongs to the UPF0235 family.
       0.559
FadE27
acyl-CoA dehydrogenase FadE27.
      
 0.527
FurA
Ferric uptake regulation protein FurA; Belongs to the Fur family.
      
 0.525
RN09_0058
Hydrolase.
      
 0.471
RN09_1088
Hypothetical protein.
  
     0.463
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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