STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2462Hypothetical protein. (258 aa)    
Predicted Functional Partners:
RN09_1397
Methylcitrate dehydratase PrpD.
  
  
 0.819
mshD
Mycothiol acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
   
    0.785
RN09_3877
Hypothetical protein.
   
    0.785
CitA
Citrate synthase 2; Belongs to the citrate synthase family.
  
 
 0.720
GltA2
Citrate synthase 1; Belongs to the citrate synthase family.
  
 
 0.720
GltA1
Methylcitrate synthase PrpC; Belongs to the citrate synthase family.
  
 
 0.720
RN09_2463
Transporter.
  
   0.636
IlvB2
Acetolactate synthase large subunit; Overlaps another CDS with the same product name.
  
  
 0.636
RN09_4242
Acetolactate synthase large subunit; Overlaps another CDS with the same product name.
  
  
 0.636
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 
 0.616
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.