STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2467Hypothetical protein. (229 aa)    
Predicted Functional Partners:
RN09_2469
Hypothetical protein.
 
  
 0.955
RN09_2470
Universal stress protein.
 
  
 0.930
RN09_0698
Hypothetical protein.
  
    0.788
RN09_2468
Hypothetical protein.
       0.782
NrdZ
Vitamin B12-dependent ribonucleoside-diphosphate reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.762
CtpF
Cation transporter ATPase F.
   
    0.761
RN09_2472
Trehalose-6-phosphate phosphatase OtsB; Overlaps another CDS with the same product name.
  
    0.674
RN09_2636
Hypothetical protein.
  
    0.589
RN09_2501
Universal stress protein.
   
    0.552
DevS
Two component sensor histidine kinase DevS.
   
    0.552
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.