Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2471Trehalose-6-phosphate phosphatase OtsB; Overlaps another CDS with the same product name. (611 aa)    
Predicted Functional Partners:
RN09_2472
Trehalose-6-phosphate phosphatase OtsB; Overlaps another CDS with the same product name.
     0.993
RN09_2469
Hypothetical protein.
  
    0.885
OtsA
Trehalose-phosphate synthase.
   
 0.789
RN09_4265
Hypothetical protein.
 
   
 0.779
RN09_2952
Trehalase; Overlaps another CDS with the same product name.
  
   
 0.674
OtsB2
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 
 0.669
RN09_2951
Trehalase; Overlaps another CDS with the same product name.
  
   
 0.627
PfkB
6-phosphofructokinase PfkB; Belongs to the carbohydrate kinase PfkB family.
 
    0.573
RN09_2470
Universal stress protein.
  
    0.553
RN09_4158
Hydrolase.
 
  
0.504
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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