STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2488Transcriptional regulator. (101 aa)    
Predicted Functional Partners:
RN09_2489
Hypothetical protein.
   
 0.983
RN09_3865
Hypothetical protein.
 
   
 0.800
RN09_2490
Hypothetical protein.
       0.701
RN09_2420
Toxin HigB.
  
 
 0.651
RN09_2422
SecB-like chaperone.
  
 
 0.635
RN09_2487
Hypothetical protein.
       0.534
RN09_2589
Ribonuclease VapC37.
  
     0.486
RN09_2491
Hypothetical protein.
       0.484
RN09_2492
Hypothetical protein.
       0.484
RN09_3403
Hypothetical protein.
  
     0.454
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.