Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2489Hypothetical protein. (201 aa)    
Predicted Functional Partners:
RN09_2488
Transcriptional regulator.
   
 0.983
RN09_3866
Transcriptional regulator.
 
   
 0.875
RN09_2490
Hypothetical protein.
       0.709
RN09_2487
Hypothetical protein.
       0.542
RN09_2420
Toxin HigB.
      
 0.509
RN09_2421
Antitoxin HigA.
 
   
 0.505
DapF
Diaminopimelate epimerase.
     
  0.500
RN09_2491
Hypothetical protein.
       0.484
RN09_2492
Hypothetical protein.
       0.484
RN09_0771
Antitoxin VapB30.
  
     0.426
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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