Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FadD21 | NarK1 | RN09_1463 | RN09_2857 | fatty-acid--CoA ligase FadD21. | Nitrate/nitrite transporter. | 0.592 |
| FadD21 | PhoP | RN09_1463 | RN09_0935 | fatty-acid--CoA ligase FadD21. | Two component system response transcriptional positive regulator PhoP. | 0.697 |
| FadD21 | tatC | RN09_1463 | RN09_2575 | fatty-acid--CoA ligase FadD21. | Sec-independent protein translocase transmembrane protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.687 |
| HelY | tatA | RN09_2574 | RN09_2576 | ATP-dependent DNA helicase HelY. | Sec-independent protein translocase membrane-bound protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.570 |
| HelY | tatC | RN09_2574 | RN09_2575 | ATP-dependent DNA helicase HelY. | Sec-independent protein translocase transmembrane protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.814 |
| LepB | TatB | RN09_3516 | RN09_1507 | Signal peptidase; Belongs to the peptidase S26 family. | Sec-independent protein translocase protein TatB. | 0.636 |
| LepB | YajC | RN09_3516 | RN09_3176 | Signal peptidase; Belongs to the peptidase S26 family. | Membrane protein secretion factor YajC. | 0.563 |
| LepB | secE | RN09_3516 | RN09_0792 | Signal peptidase; Belongs to the peptidase S26 family. | Preprotein translocase SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.654 |
| LepB | tatC | RN09_3516 | RN09_2575 | Signal peptidase; Belongs to the peptidase S26 family. | Sec-independent protein translocase transmembrane protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.649 |
| NarK1 | FadD21 | RN09_2857 | RN09_1463 | Nitrate/nitrite transporter. | fatty-acid--CoA ligase FadD21. | 0.592 |
| NarK1 | PhoP | RN09_2857 | RN09_0935 | Nitrate/nitrite transporter. | Two component system response transcriptional positive regulator PhoP. | 0.412 |
| NarK1 | tatC | RN09_2857 | RN09_2575 | Nitrate/nitrite transporter. | Sec-independent protein translocase transmembrane protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.700 |
| PhoP | FadD21 | RN09_0935 | RN09_1463 | Two component system response transcriptional positive regulator PhoP. | fatty-acid--CoA ligase FadD21. | 0.697 |
| PhoP | NarK1 | RN09_0935 | RN09_2857 | Two component system response transcriptional positive regulator PhoP. | Nitrate/nitrite transporter. | 0.412 |
| PhoP | YajC | RN09_0935 | RN09_3176 | Two component system response transcriptional positive regulator PhoP. | Membrane protein secretion factor YajC. | 0.514 |
| PhoP | tatC | RN09_0935 | RN09_2575 | Two component system response transcriptional positive regulator PhoP. | Sec-independent protein translocase transmembrane protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.855 |
| RN09_1037 | TatB | RN09_1037 | RN09_1507 | Oxidase. | Sec-independent protein translocase protein TatB. | 0.478 |
| RN09_1037 | tatA | RN09_1037 | RN09_2576 | Oxidase. | Sec-independent protein translocase membrane-bound protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.478 |
| RN09_1037 | tatC | RN09_1037 | RN09_2575 | Oxidase. | Sec-independent protein translocase transmembrane protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.658 |
| TatB | LepB | RN09_1507 | RN09_3516 | Sec-independent protein translocase protein TatB. | Signal peptidase; Belongs to the peptidase S26 family. | 0.636 |
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