Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2802Diacylglycerol acyltransferase; Belongs to the long-chain O-acyltransferase family. (445 aa)    
Predicted Functional Partners:
AcrA1
acyl-CoA-reductase AcrA.
 
 
 0.983
PE_PGRS63
Triacylglycerol lipase Lip.
 
 
  0.927
RN09_2771
Diacylglycerol kinase.
    
  0.900
LipM
Esterase LipM.
  
  
 0.732
RN09_1913
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.712
RN09_0672
Oxidoreductase; Overlaps another CDS with the same product name.
 
  
 0.710
RN09_3222
Hypothetical protein.
 
   
 0.701
RN09_4611
Lipase LipE; Overlaps another CDS with the same product name.
 
     0.667
RN09_0500
Membrane bound polyketide synthase.
  
 
 0.649
RN09_2045
Polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.649
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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