STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2811Hypothetical protein. (246 aa)    
Predicted Functional Partners:
RN09_2810
Hypothetical protein.
      0.862
RN09_4131
Type B diterpene cyclase.
 
   
 0.789
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
 
     0.773
PPE6
PPE family protein PPE5.
  
     0.770
RN09_4083
PPE family protein PPE55; Overlaps another CDS with the same product name.
  
     0.770
RN09_4087
PPE family protein PPE55; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family.
  
     0.770
RN09_4091
PPE family protein PPE56.
  
     0.770
RN09_0438
PPE family protein PPE8.
  
     0.768
RN09_2563
Hypothetical protein.
  
     0.765
RN09_4068
PPE family protein PPE54; Overlaps another CDS with the same product name.
  
     0.765
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.