Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2845Universal stress protein. (111 aa)    
Predicted Functional Partners:
RN09_2846
Universal stress protein.
     0.957
RocE
Cationic amino acid transporter permease RocE.
 
  
 0.924
RocD1
Ornithine aminotransferase; Overlaps another CDS with the same product name.
  
  
 0.808
RocD2
Ornithine aminotransferase; Overlaps another CDS with the same product name.
  
  
 0.796
RN09_2850
Hypothetical protein.
  
  
 0.740
RN09_2851
Hypothetical protein.
  
  
 0.740
RN09_0852
Elongation factor Tu; Overlaps another CDS with the same product name.
      
 0.672
MoxR1
Transcriptional regulator MoxR1.
     
 0.657
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
      
 0.610
prcA
Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.
   
  
 0.595
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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