Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_2852AsnC family transcriptional regulator. (148 aa)    
Predicted Functional Partners:
RN09_2850
Hypothetical protein.
 
   
 0.748
RN09_2851
Hypothetical protein.
 
   
 0.738
RocD2
Ornithine aminotransferase; Overlaps another CDS with the same product name.
 
   
 0.603
RocD1
Ornithine aminotransferase; Overlaps another CDS with the same product name.
     
 0.550
PhoH1
Protein PhoH.
      
 0.507
RocE
Cationic amino acid transporter permease RocE.
  
  
 0.502
RN09_2444
HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.487
RN09_3214
Transcriptional regulator.
   
  
 0.482
RN09_2846
Universal stress protein.
     
 0.477
RN09_2121
Hypothetical protein.
   
    0.475
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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