Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN09_3076succinyl-CoA:3-ketoacid-CoA transferase subunit B; Overlaps another CDS with the same product name. (68 aa)    
Predicted Functional Partners:
ScoA
succinyl-CoA:3-ketoacid-CoA transferase subunit A.
 
 
 0.996
ScoB
succinyl-CoA:3-ketoacid-CoA transferase subunit B; Overlaps another CDS with the same product name.
     0.980
AccD1
acetyl-/propionyl-CoA carboxylase subunit beta.
  
 
 0.915
AccA1
acetyl-/propionyl-CoA carboxylase subunit alpha.
  
 
 0.877
RN09_4353
CoA-transferase subunit alpha.
  
 
 0.855
FadB
Fatty oxidation protein FadB.
  
 0.765
FadD35
fatty-acid--CoA ligase FadD35.
  
 
 0.743
SucA
Putative 2-oxoglutarate dehydrogenase SUCA (alpha-ketoglutarate dehydrogenase); Multifunctional 2-oxoglutarate dehydrogenase E1 component /2-oxoglutarate dehydrogenase dihydrolipoyllysine-residue succinyltransferase.
   
 
 0.716
PdhB
Branched-chain keto acid dehydrogenase E1 component subunit beta.
  
 
 0.587
clpP
ATP-dependent CLP protease proteolytic subunit 2; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
    
  0.561
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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