Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3147Glutamine ABC transporter permease. (349 aa)    
Predicted Functional Partners:
GlnQ
Glutamine ABC transporter ATP-binding protein.
 
 0.999
RN09_0091
Glutamine ABC transporter ATP-binding protein.
 
 
 0.887
RN09_1208
Adhesion component ABC transporter ATP-binding protein.
  
 
 0.813
RN09_1834
Hypothetical protein.
      
 0.662
RN09_1431
Hypothetical protein.
 
    0.655
RN09_4116
Hypothetical protein.
 
 
 
 0.585
RN09_3887
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
  
     0.503
RN09_4744
ESX-1 secretion system protein EccE1.
  
     0.495
RN09_3145
Hypothetical protein.
       0.483
RN09_3146
Hypothetical protein.
       0.483
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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