Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN09_3199Membrane protein. (351 aa)    
Predicted Functional Partners:
PimA
Alpha-(1-2)-phosphatidylinositol mannosyltransferase.
 
  
 0.945
RN09_3201
Phosphatidylinositol mannoside acyltransferase.
 
   
 0.934
PgsA1
CDP-diacylglycerol--inositol 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.868
RN09_3203
AP-4-A phosphorylase.
       0.868
RN09_3204
threonine--tRNA ligase.
       0.797
thrS
threonine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.787
RN09_2969
Hypothetical protein.
 
     0.685
RN09_1821
Peptidoglycan endopeptidase RipA; Overlaps another CDS with the same product name.
 
    0.684
RN09_1373
Hypothetical protein.
  
     0.662
LppM
Lipoprotein LppM.
  
     0.644
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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