Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3255Hypothetical protein. (217 aa)    
Predicted Functional Partners:
SdhC
Succinate dehydrogenase cytochrome B-556 subunit; Overlaps another CDS with the same product name.
 
   
 0.828
SdhD
Succinate dehydrogenase hydrophobic membrane anchor subunit.
 
     0.796
RN09_1702
Hypothetical protein.
  
    0.795
RibD
Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase.
       0.776
SdhB
Succinate dehydrogenase iron-sulfur protein subunit.
 
    0.776
RN09_3366
Transmembrane protein.
  
     0.774
SdhA
Succinate dehydrogenase flavoprotein subunit; Overlaps another CDS with the same product name.
 
    0.701
RN09_4033
Succinate dehydrogenase flavoprotein subunit; Overlaps another CDS with the same product name.
 
    0.588
RN09_3258
Alpha-(1->3)-arabinofuranosyltransferase.
       0.494
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
   0.491
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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