Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3285Hypothetical protein. (197 aa)    
Predicted Functional Partners:
RN09_2969
Hypothetical protein.
  
  
 0.774
RN09_4178
Hypothetical protein.
  
     0.769
RN09_2684
Hypothetical protein.
  
     0.755
RN09_3686
1,4-alpha-glucan branching protein; Belongs to the glycosyl hydrolase 57 family.
  
     0.704
LpqM
Lipoprotein peptidase LpqM.
  
     0.682
RN09_3283
Integral membrane protein.
 
     0.682
RN09_1821
Peptidoglycan endopeptidase RipA; Overlaps another CDS with the same product name.
  
   
 0.648
RN09_3690
Acetyltransferase.
 
  
 0.647
RN09_3910
Integral membrane protein.
  
     0.643
RN09_3943
Lipoprotein LpqB.
  
     0.620
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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