RN09_3288 protein (Mycobacterium tuberculosis variant africanum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Knowledge-based Evidence

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textmining

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co-expression

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[Homology]

Score

RN09_3288

Alanine-rich transmembrane protein. (143 aa)

Predicted Functional Partners:

RN09_3286

0.775

dut

0.771

RN09_0539

0.649

LpqU

0.590

RN09_4765

0.559

RN09_1157

0.544

RN09_4224

0.543

RN09_2749

0.534

RN09_4222

0.524

TB9.4

0.516

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LpqU	RN09_0539	RN09_1258	RN09_0539	Lipoprotein LpqU.	ATPase; Overlaps another CDS with the same product name.	0.451
LpqU	RN09_3288	RN09_1258	RN09_3288	Lipoprotein LpqU.	Alanine-rich transmembrane protein.	0.590
LpqU	RN09_4765	RN09_1258	RN09_4765	Lipoprotein LpqU.	ESX-2 secretion system protein EccB.	0.569
RN09_0539	LpqU	RN09_0539	RN09_1258	ATPase; Overlaps another CDS with the same product name.	Lipoprotein LpqU.	0.451
RN09_0539	RN09_1157	RN09_0539	RN09_1157	ATPase; Overlaps another CDS with the same product name.	Chorismate mutase.	0.616
RN09_0539	RN09_2749	RN09_0539	RN09_2749	ATPase; Overlaps another CDS with the same product name.	Transmembrane protein.	0.552
RN09_0539	RN09_3288	RN09_0539	RN09_3288	ATPase; Overlaps another CDS with the same product name.	Alanine-rich transmembrane protein.	0.649
RN09_0539	RN09_4224	RN09_0539	RN09_4224	ATPase; Overlaps another CDS with the same product name.	ESX-4 secretion system protein EccB4.	0.432
RN09_1157	RN09_0539	RN09_1157	RN09_0539	Chorismate mutase.	ATPase; Overlaps another CDS with the same product name.	0.616
RN09_1157	RN09_3288	RN09_1157	RN09_3288	Chorismate mutase.	Alanine-rich transmembrane protein.	0.544
RN09_2749	RN09_0539	RN09_2749	RN09_0539	Transmembrane protein.	ATPase; Overlaps another CDS with the same product name.	0.552
RN09_2749	RN09_3288	RN09_2749	RN09_3288	Transmembrane protein.	Alanine-rich transmembrane protein.	0.534
RN09_3286	RN09_3288	RN09_3286	RN09_3288	Hypothetical protein.	Alanine-rich transmembrane protein.	0.775
RN09_3286	dut	RN09_3286	RN09_3287	Hypothetical protein.	Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	0.777
RN09_3288	LpqU	RN09_3288	RN09_1258	Alanine-rich transmembrane protein.	Lipoprotein LpqU.	0.590
RN09_3288	RN09_0539	RN09_3288	RN09_0539	Alanine-rich transmembrane protein.	ATPase; Overlaps another CDS with the same product name.	0.649
RN09_3288	RN09_1157	RN09_3288	RN09_1157	Alanine-rich transmembrane protein.	Chorismate mutase.	0.544
RN09_3288	RN09_2749	RN09_3288	RN09_2749	Alanine-rich transmembrane protein.	Transmembrane protein.	0.534
RN09_3288	RN09_3286	RN09_3288	RN09_3286	Alanine-rich transmembrane protein.	Hypothetical protein.	0.775
RN09_3288	RN09_4222	RN09_3288	RN09_4222	Alanine-rich transmembrane protein.	ESX-4 secretion system protein EccD4.	0.524