Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3341DNA translocase FtsK; Overlaps another CDS with the same product name. (146 aa)    
Predicted Functional Partners:
FtsK
DNA translocase FtsK; Overlaps another CDS with the same product name; Belongs to the FtsK/SpoIIIE/SftA family.
      0.976
RN09_1157
Chorismate mutase.
 
   
 0.783
NarG
Nitrate reductase subunit alpha; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.666
Acn
Iron-regulated aconitate hydratase; Overlaps another CDS with the same product name.
      
 0.654
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
 
 0.638
RN09_0996
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.621
PE_PGRS48
PE-PGRS family protein PE_PGRS48.
    
 
 0.616
RN09_3330
Hypothetical protein.
 
     0.613
RN09_2325
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
     
 0.570
EsxU
ESAT-6 like protein EsxU; Belongs to the WXG100 family.
  
 
 0.549
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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