Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DfrA | RN09_3357 | RN09_3355 | RN09_3357 | Dihydrofolate reductase; Belongs to the dihydrofolate reductase family. | Alanine-rich hydrolase. | 0.720 |
DfrA | gcvP | RN09_3355 | RN09_2257 | Dihydrofolate reductase; Belongs to the dihydrofolate reductase family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.683 |
DfrA | thyA | RN09_3355 | RN09_3356 | Dihydrofolate reductase; Belongs to the dihydrofolate reductase family. | Thymidylate synthase ThyA; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.999 |
OtsB2 | RN09_2469 | RN09_4126 | RN09_2469 | Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | Hypothetical protein. | 0.999 |
OtsB2 | RN09_2532 | RN09_4126 | RN09_2532 | Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | Hypothetical protein. | 0.459 |
OtsB2 | RN09_3357 | RN09_4126 | RN09_3357 | Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | Alanine-rich hydrolase. | 0.459 |
RN09_2469 | OtsB2 | RN09_2469 | RN09_4126 | Hypothetical protein. | Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | 0.999 |
RN09_2469 | RN09_2532 | RN09_2469 | RN09_2532 | Hypothetical protein. | Hypothetical protein. | 0.779 |
RN09_2469 | RN09_3357 | RN09_2469 | RN09_3357 | Hypothetical protein. | Alanine-rich hydrolase. | 0.742 |
RN09_2532 | OtsB2 | RN09_2532 | RN09_4126 | Hypothetical protein. | Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | 0.459 |
RN09_2532 | RN09_2469 | RN09_2532 | RN09_2469 | Hypothetical protein. | Hypothetical protein. | 0.779 |
RN09_2532 | RN09_3357 | RN09_2532 | RN09_3357 | Hypothetical protein. | Alanine-rich hydrolase. | 0.925 |
RN09_2532 | gcvP | RN09_2532 | RN09_2257 | Hypothetical protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.467 |
RN09_3357 | DfrA | RN09_3357 | RN09_3355 | Alanine-rich hydrolase. | Dihydrofolate reductase; Belongs to the dihydrofolate reductase family. | 0.720 |
RN09_3357 | OtsB2 | RN09_3357 | RN09_4126 | Alanine-rich hydrolase. | Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | 0.459 |
RN09_3357 | RN09_2469 | RN09_3357 | RN09_2469 | Alanine-rich hydrolase. | Hypothetical protein. | 0.742 |
RN09_3357 | RN09_2532 | RN09_3357 | RN09_2532 | Alanine-rich hydrolase. | Hypothetical protein. | 0.925 |
RN09_3357 | RN09_3874 | RN09_3357 | RN09_3874 | Alanine-rich hydrolase. | Alanine/proline-rich protein. | 0.573 |
RN09_3357 | gcvP | RN09_3357 | RN09_2257 | Alanine-rich hydrolase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.467 |
RN09_3357 | thyA | RN09_3357 | RN09_3356 | Alanine-rich hydrolase. | Thymidylate synthase ThyA; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.582 |
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