Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3371Hypothetical protein. (305 aa)    
Predicted Functional Partners:
RN09_3370
Oxidoreductase.
     0.914
EphD
Oxidoreductase EphD.
 
     0.620
RN09_3925
stearoyl-CoA 9-desaturase.
 
     0.521
RN09_3372
Hypothetical protein.
 
     0.508
RN09_3141
Hypothetical protein.
      
 0.496
RN09_4206
Transmembrane protein.
 
     0.492
EphB
Epoxide hydrolase EphB; Overlaps another CDS with the same product name.
  
     0.487
RN09_2819
Metallo-hydrolase.
  
     0.446
RN09_2013
Bifunctional lysine--tRNA ligase/phosphatidylglycerol lysyltransferase.
  
     0.440
AlkB
Transmembrane alkane 1-monooxygenase AlkB.
 
     0.419
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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