Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3375Alanine-rich oxidoreductase. (275 aa)    
Predicted Functional Partners:
RN09_0033
Hypothetical protein.
  
  
  0.974
NarI
Nitrate reductase subunit gamma.
    
 0.906
NarK3
Nitrate/nitrite transporter; Overlaps another CDS with the same product name.
    
 0.905
NarK2
Nitrate/nitrite transporter.
    
 0.905
NarK1
Nitrate/nitrite transporter.
    
 0.905
NirB
Nitrite reductase large subunit NirB; Overlaps another CDS with the same product name; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.901
NarH
Nitrate reductase subunit beta.
    
  0.901
NirD
Nitrite reductase small subunit NirD.
     
  0.900
NarG
Nitrate reductase subunit alpha; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.900
RN09_3100
Fatty acid synthase; Overlaps another CDS with the same product name.
  
  
 0.648
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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