Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3383Alanine-rich protein. (587 aa)    
Predicted Functional Partners:
SirR
Transcriptional repressor SirR.
       0.566
SigF
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
  
  
 0.498
RN09_0777
Hypothetical protein.
  
     0.496
RN09_0129
Integral membrane protein; Overlaps another CDS with the same product name.
  
     0.493
RN09_1072
Hypothetical protein.
  
     0.485
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
  
     0.479
RN09_3381
Bifunctional riboflavin kinase /FMN adenylyltransferase; Overlaps another CDS with the same product name.
       0.470
RibF
Bifunctional riboflavin kinase /FMN adenylyltransferase; Overlaps another CDS with the same product name.
       0.470
RN09_3419
CRISPR type III-associated RAMP protein Csm5.
  
     0.465
RN09_3002
Overlaps another CDS with the same product name.
  
     0.456
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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