Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3387Transposase. (459 aa)    
Predicted Functional Partners:
RN09_3388
Resolvase.
 
  
 0.992
FadE21
acyl-CoA dehydrogenase FadE21.
  
    0.921
RN09_3621
Resolvase.
 
  
 0.892
RN09_0748
Resolvase.
 
  
 0.874
Ltp1
Lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.868
RN09_1131
Resolvase.
 
  
 0.799
RN09_4681
Resolvase.
 
  
 0.791
RN09_3493
Resolvase; Overlaps another CDS with the same product name.
 
  
 0.781
RN09_3620
Transposase.
   
    0.768
RN09_0228
Hypothetical protein.
   
    0.745
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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